Softwares I wrote

pytraj

A Python package for interactive data analysis for molecular dynamics simulations

pymdgx

A Python package binding to mdgx, a simulation package

nglview

An IPython widget to interactively view molecular structures and trajectories

pdb4amber

PDB analyzer and visualizer for Amber simulations

Softwares I contribute

cpptraj

CPPTRAJ is a program designed to load and analyze molecular dynamics trajectories and relevant data sets derived from their analysis

ParmEd

Cross-program parameter and topology file editor and molecular mechanical simulator engine

mdsrv

MD trajectory server for visualization

MDAnalysis

A Python library to analyze molecular dynamics trajectories